| Ranking | Volume | Sales | Year |
|---|
| 1 | One Piece | 12.314.326 | 2016 |
| 2 | Assassination Classroom | 6.887.192 | 2016 |
| 3 | Kingdom | 6.595.968 | 2016 |
| 4 | Attack on Titan | 6.544.081 | 2016 |
| 5 | Haikyu!! | 6.474.394 | 2016 |
| 6 | The Seven Deadly Sins | 5.115.573 | 2016 |
| 7 | My Hero Academia | 5.114.916 | 2016 |
| 8 | Tokyo Ghoul : re | 4.278.599 | 2016 |
| 9 | One Punch Man | 3.979.760 | 2016 |
| 10 | Food Wars! | 3.477.128 | 2016 |
| 11 | Chihayafuru | 3.019.944 | 2016 |
| 12 | Terra Formars | 3.013.816 | 2016 |
| 13 | Fairy Tail | 2.719.478 | 2016 |
| 14 | Detective Conan | 2.622.350 | 2016 |
| 15 | Erased | 2.507.468 | 2016 |
| 16 | Prison School | 2.449.593 | 2016 |
| 17 | Bleach | 2.253.028 | 2016 |
| 18 | World Trigger | 2.234.851 | 2016 |
| 19 | Gintama | 2.231.751 | 2016 |
| 20 | Magi: The Labyrinth of Magic | 2.215.458 | 2016 |
| 21 | Ace of Diamond Act II | 2.034.806 | 2016 |
| 22 | Kimi ni Todoke | 2.021.612 | 2016 |
| 23 | Days | 1.986.335 | 2016 |
| 24 | Nisekoi | 1.914.613 | 2016 |
| 25 | Bungo Stray Dogs | 1.879.623 | 2016 |
| 26 | Golden Kamuy | 1.835.668 | 2016 |
| 27 | Major 2nd | 1.816.669 | 2016 |
| 28 | Orange | 1.809.055 | 2016 |
| 29 | Seraph of the End | 1.735.680 | 2016 |
| 30 | Ajin | 1.679.180 | 2016 |
| 31 | Jojo's Bizarre Adventure | 1.638.382 | 2016 |
| 32 | Hunter X Hunter | 1.600.002 | 2016 |
| 33 | March comes in like a Lion | 1.531.475 | 2016 |
| 34 | Giant Killing | 1.521.579 | 2016 |
| 35 | Dagashi Kashi | 1.489.805 | 2016 |
| 36 | Toriko | 1.419.677 | 2016 |
| 37 | Omoi, Omoware, Furi, Furare | 1.400.283 | 2016 |
| 38 | Yowamushi Pedal | 1.377.798 | 2016 |
| 39 | Ookami Shoujo to Kuroouji | 1.375.765 | 2016 |
| 40 | Ore Monogatari!! | 1.358.137 | 2016 |
| 41 | Kounodori | 1.342.038 | 2016 |
| 42 | I am a Hero | 1.336.142 | 2016 |
| 43 | Black Clover | 1.334.762 | 2016 |
| 44 | Kurosaki-kun no Iinari ni Nante Naranai | 1.312.903 | 2016 |
| 45 | Blue Exorcist | 1.309.256 | 2016 |
| 46 | Gekkan Shoujo Nozaki-kun | 1.302.601 | 2016 |
| 47 | Tokyo Ghoul | 1.245.311 | 2016 |
| 48 | Space Brothers | 1.237.434 | 2016 |
| 49 | A Silent Voice | 1.192.847 | 2016 |
| 50 | Your Lie in April | 1.187.574 | 2016 |